The war between the Levamme Empire and the Amatsukami Imperium has been raging for years. In the midst of this struggle, the prince of the Levamme Empire declares his love for Juana del Moral and vows to end the war in one year, as part of his marriage proposal. When the Amatsukami catch wind of this, they assault the del Moral residence, targeting Juana's life. As a last-ditch effort to bring the prince his bride, the San Maltilia Airforce employs a mercenary of mixed blood—a bestado—to fly Juana to the prince in secret.
Mikio Osawa, an average 5th grade school boy, lives in the suburbs of Osaka. Mikio likes Haruko Tezuka, a cute little girl in his class. However, Mikio is too shy and withdrawn to tell Haruko that he likes her. One day, Mikio's close friend Megane brings news that Haruko is about to move away to another town...
It is 300 years into the future. Earth's environment had been devastated by mankind's own foolish plans and humankind is beleaguered by the sentient forests which they have awoken. The world balance is tipped when a young boy named Agito stumbles across a machine that glowed in a strange blue hue inside a forbidden sanctuary.